PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA07g17330
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family TCP
Protein Properties Length: 438aa    MW: 47865.8 Da    PI: 7.3192
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA07g17330genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP120.52e-3773184289
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......ssssaseceaesssssasnsssg..... 88 
                 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++akpai+el+++       +s++a  +   +++++++++  +     
  CA07g17330  73 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKPAIDELAELppwkpniGSDDAGTT---NERNQKQQEDTNnnfaf 168
                 79**************************************************************877765522222111...11111111111112334 PP

         TCP  89 ...............k 89 
                                +
  CA07g17330 169 qhgnaslfddnvagpS 184
                 4444555543322220 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.1E-3273180IPR005333Transcription factor, TCP
PROSITE profilePS5136934.54375133IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
LQSPQQLLPL NQPPQLPPLH QTPKKRSYLP PLGQNDATLR GGGKMGETSR LGARDNNVGE  60
IVEVQGGHIV RSTGRKDRHS KVCTAKGPRD RRVRLSAHTA IQFYDVQDRL GYDRPSKAVD  120
WLIKKAKPAI DELAELPPWK PNIGSDDAGT TNERNQKQQE DTNNNFAFQH GNASLFDDNV  180
AGPSSKRAME SSNTASFLPP SLESDAIADT IKSFFPMGSA TSSNSSAMQF QSFQEPHLLP  240
RTNSQNQDLS LSLQFQDPIL LHHQNQTNRR EQVQVQPPAH FTGSTPLGFD TSGWSMHHQQ  300
TVELGRVQRV GSWSDSRDTA PGGGGYLFNS PPAPVLLQQL FGQNQVFTQR GPLQSSNTSS  360
IRAWMDPSAI AIASADPSQH HHQAAFPMYQ STIPGYGFAS DVGGFSGFRI PARIQGEEEE  420
HDGISDKPSS ASSDSRH*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM2108750.0HM210875.1 Capsicum annuum lanceolate gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016581164.10.0PREDICTED: transcription factor TCP4-like
SwissprotQ8LPR51e-108TCP4_ARATH; Transcription factor TCP4
TrEMBLE2FYM10.0E2FYM1_CAPAN; Lanceolate
STRINGPGSC0003DMT4000322680.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32072349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.31e-100TCP family protein